Multivalent binding oligomers inhibit HIV Tat-TAR interaction critical for viral replication

Bioorg Med Chem Lett. 2009 Dec 15;19(24):6893-7. doi: 10.1016/j.bmcl.2009.10.078. Epub 2009 Oct 23.

Abstract

We describe the development of a new type of scaffold to target RNA structures. Multivalent binding oligomers (MBOs) are molecules in which multiple sidechains extend from a polyamine backbone such that favorable RNA binding occurs. We have used this strategy to develop MBO-based inhibitors to prevent the association of a protein-RNA complex, Tat-TAR, that is essential for HIV replication. In vitro binding assays combined with model cell-based assays demonstrate that the optimal MBOs inhibit Tat-TAR binding at low micromolar concentrations. Antiviral studies are also consistent with the in vitro and cell-based assays. MBOs provide a framework for the development of future RNA-targeting molecules.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-HIV Agents / chemistry*
  • Anti-HIV Agents / pharmacology
  • HIV Long Terminal Repeat / drug effects*
  • HIV-1 / drug effects*
  • Humans
  • Nucleic Acid Conformation
  • RNA, Viral / drug effects
  • RNA, Viral / metabolism
  • Virus Replication / drug effects*
  • tat Gene Products, Human Immunodeficiency Virus / antagonists & inhibitors*
  • tat Gene Products, Human Immunodeficiency Virus / metabolism

Substances

  • Anti-HIV Agents
  • RNA, Viral
  • tat Gene Products, Human Immunodeficiency Virus